Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0386 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1420901 bp
Thymine Count
1429063 bp
Guanine Count
1451151 bp
Cytosine Count
1431767 bp
Genome Length
5733849 bp
Protein-coding Genes
5145 genes
Non-Coding Genes
448 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbp-type 22 kda peptidyl-prolyl cis-trans isomerase | SAMEA3753290_02142 | Not Available | Positive | 2244165 - 2244785 | 22217.5 |
| d-serine/d-alanine/glycine transporter | SAMEA3753290_02143 | Not Available | Positive | 2245094 - 2246506 | 51662.6 |
| regulator of cell morphogenesis and no signaling | SAMEA3753290_02144 | Not Available | Negative | 2246551 - 2247213 | 24956.1 |
| membrane protein ytff | SAMEA3753290_02145 | Not Available | Negative | 2247321 - 2248286 | 35225.6 |
| nad(p)h:quinone oxidoreductase | SAMEA3753290_02146 | Not Available | Negative | 2248394 - 2249254 | 29767.2 |
| putative transcriptional regulator ytfh | SAMEA3753290_02147 | Not Available | Positive | 2249343 - 2249723 | 14076.0 |
| bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein | SAMEA3753290_02148 | Not Available | Negative | 2249841 - 2251784 | 70926.0 |
| cysq protein | SAMEA3753290_02149 | Not Available | Positive | 2251974 - 2252714 | 27191.4 |
| uncharacterised protein | SAMEA3753290_02150 | Not Available | Positive | 2253167 - 2253838 | 25454.4 |
| protein ytfj | SAMEA3753290_02151 | Not Available | Negative | 2253928 - 2254482 | 20495.7 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





