Escherichia coli strain VREC0353

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VREC0353 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and possesses flagella, allowing for mobility. This strain is typically found in host-associated habitats, indicating a close relationship with various organisms, including Homo sapiens, Gallus gallus, Bos taurus, and other vertebrates as well as some plants like Solanum lycopersicum. The strain thrives optimally at 37°C, falling within a mesophilic temperature range. It is characterized by having a single replicon and two membranes, which is typical of Gram-negative bacteria. VREC0353 exhibits a free-living biotic relationship, suggesting it can exist independently of its hosts under certain conditions. Clinically, E. coli strain VREC0353 is associated with a wide range of health effects, particularly in humans, where it can cause urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as septicemia and hemolytic uremic syndrome (HUS). The strain is also linked to neonatal meningitis and various forms of diarrhea, including hemorrhagic colitis. Its pathogenicity highlights the potential for significant health impacts in both humans and animals, emphasizing the importance of monitoring and managing infections caused by this strain. The diverse range of hosts, including mammals, birds, and even some insects, suggests that E. coli strain VREC0353 plays a versatile ecological role. This adaptability may facilitate the bacterium's persistence in various environments, reinforcing its significance in both health and disease across multiple species.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VREC0353

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VREC0353
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VREC0353 genome assembly, contig:

Gene Summary

Adenine Count

1469868 bp

Thymine Count

1472956 bp

Guanine Count

1488838 bp

Cytosine Count

1489051 bp

Genome Length

5920936 bp

Protein-coding Genes

5110 genes

Non-Coding Genes

676 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Major tail proteinSAMEA3752372_00071Not AvailablePositive65298 - 6604125698.2
Putative tail componentSAMEA3752372_00072Not AvailablePositive66102 - 6648814273.9
Putative minor tail proteinSAMEA3752372_00073Not AvailablePositive66497 - 6682612350.6
Tail length tape measure proteinSAMEA3752372_00074Not AvailablePositive66798 - 69860111794.0
Trna-pro;Not AvailableNot AvailablePositive67199 - 67275Not Available
Trna-ser;Not AvailableNot AvailablePositive67318 - 67404Not Available
Trna-his;Not AvailableNot AvailablePositive67425 - 67500Not Available
Trna-arg;Not AvailableNot AvailablePositive67559 - 67635Not Available
Tail componentSAMEA3752372_00075Not AvailablePositive69857 - 7018612336.8
Tail componentSAMEA3752372_00076Not AvailablePositive70186 - 7088425620.9

Displaying genes 51 – 60 of 5786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total