Escherichia coli strain VREC0290

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VREC0290 is a Gram-negative, rod-shaped bacterium exhibiting a facultative anaerobic metabolism. It is capable of existing in both pairs and singles, demonstrating mobility due to the presence of flagella. This strain thrives optimally at 37°C and has a mesophilic temperature range. It has a single replicon and is characterized by a double membrane structure. VREC0290 is predominantly associated with a variety of hosts, including Homo sapiens (humans), Gallus gallus (chickens), and multiple other species from different taxonomic groups such as mammals, birds, and plants. This indicates a broad ecological niche and adaptability to diverse environments. The strain is known for its pathogenicity in humans, being associated with numerous health issues such as urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions like septicemia, neonatal meningitis, and hemolytic uremic syndrome (HUS). These health effects highlight the strain's role as a significant pathogen in both community and nosocomial settings. Biologically, the presence of E. coli strain VREC0290 in various hosts suggests its potential for transmission across species, which may have implications for zoonotic diseases. Its ability to thrive in different environments, coupled with its pathogenic traits, underscores the importance of monitoring this strain in clinical and environmental contexts to mitigate health risks associated with its infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VREC0290

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VREC0290
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VREC0290 genome assembly, contig:

Gene Summary

Adenine Count

1357138 bp

Thymine Count

1355714 bp

Guanine Count

1381291 bp

Cytosine Count

1387533 bp

Genome Length

5482789 bp

Protein-coding Genes

4858 genes

Non-Coding Genes

456 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-asn;Not AvailableNot AvailablePositive20725 - 20800Not Available
Tail componentSAMEA3472114_00031Not AvailablePositive20936 - 2153522996.1
Tail componentSAMEA3472114_00032Not AvailablePositive21532 - 2210419305.3
Trna-leu;Not AvailableNot AvailablePositive21577 - 21661Not Available
Host specificity proteinSAMEA3472114_00033Not AvailablePositive22165 - 2434879951.0
Host specificity proteinSAMEA3472114_00034Not AvailablePositive24538 - 2557837109.6
Lom proteinSAMEA3472114_00035Not AvailablePositive25649 - 2624821824.2
Putative nucleoid-associated proteinSAMEA3472114_01060Not AvailableNegative1131534 - 113254137824.6
conserved protein, upf0352 familySAMEA3472114_01061Not AvailablePositive1132723 - 11329508288.95
putative sulfataseSAMEA3472114_01062Not AvailablePositive1132970 - 113473067299.8

Displaying genes 51 – 60 of 5314 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total