Escherichia coli strain VREC0287

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VREC0287 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism and possesses flagella, allowing for mobility. This strain is classified as mesophilic, with an optimal growth temperature of 37°C. VREC0287 is capable of existing in pairs or singles and is free-living, associated with a variety of hosts including Homo sapiens, various livestock species such as Bos taurus and Sus scrofa, as well as other animals and even plants like Solanum lycopersicum. This strain is notable for its pathogenicity in humans, being associated with a wide range of health effects including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like neonatal meningitis and hemolytic uremic syndrome (HUS). The strain's pathogenic potential extends to causing peritonitis, diarrhea, and septicemia, which underscores its role in foodborne infections and clinical settings. The extensive list of hosts suggests that E. coli strain VREC0287 has a significant ecological niche, where it can inhabit diverse environments ranging from mammals to plants. Its ability to cause infections in humans and other species highlights the strain's potential impact on public health and agriculture. Understanding the biotic relationships and health implications associated with this strain can inform strategies for managing infections and mitigating risks in both human and veterinary medicine.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VREC0287

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VREC0287
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VREC0287 genome assembly, contig:

Gene Summary

Adenine Count

1316662 bp

Thymine Count

1318217 bp

Guanine Count

1361169 bp

Cytosine Count

1321348 bp

Genome Length

5317590 bp

Protein-coding Genes

4540 genes

Non-Coding Genes

503 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Capsid scaffolding proteinSAMEA3472108_01014Not AvailablePositive1045344 - 104619831292.7
Capsid proteinSAMEA3472108_01015Not AvailablePositive1046259 - 104732639838.3
R proteinSAMEA3472108_01016Not AvailablePositive1047330 - 104808527680.0
Phage head proteinSAMEA3472108_01017Not AvailablePositive1048185 - 104869118826.6
Phage tail proteinSAMEA3472108_01018Not AvailablePositive1048691 - 10488947249.66
HolinSAMEA3472108_01019Not AvailablePositive1048885 - 10491068228.16
Prophage lysozymeSAMEA3472108_01020Not AvailablePositive1049090 - 104959918642.5
I-spaninSAMEA3472108_01021Not AvailablePositive1049596 - 105002115934.2
Lysis proteinSAMEA3472108_01022Not AvailablePositive1049996 - 10501545571.48
Tail proteinSAMEA3472108_01023Not AvailablePositive1050117 - 105058417605.9

Displaying genes 81 – 90 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total