Escherichia coli strain VREC0287

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VREC0287 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism and possesses flagella, allowing for mobility. This strain is classified as mesophilic, with an optimal growth temperature of 37°C. VREC0287 is capable of existing in pairs or singles and is free-living, associated with a variety of hosts including Homo sapiens, various livestock species such as Bos taurus and Sus scrofa, as well as other animals and even plants like Solanum lycopersicum. This strain is notable for its pathogenicity in humans, being associated with a wide range of health effects including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like neonatal meningitis and hemolytic uremic syndrome (HUS). The strain's pathogenic potential extends to causing peritonitis, diarrhea, and septicemia, which underscores its role in foodborne infections and clinical settings. The extensive list of hosts suggests that E. coli strain VREC0287 has a significant ecological niche, where it can inhabit diverse environments ranging from mammals to plants. Its ability to cause infections in humans and other species highlights the strain's potential impact on public health and agriculture. Understanding the biotic relationships and health implications associated with this strain can inform strategies for managing infections and mitigating risks in both human and veterinary medicine.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VREC0287

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VREC0287
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VREC0287 genome assembly, contig:

Gene Summary

Adenine Count

1316662 bp

Thymine Count

1318217 bp

Guanine Count

1361169 bp

Cytosine Count

1321348 bp

Genome Length

5317590 bp

Protein-coding Genes

4540 genes

Non-Coding Genes

503 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna pseudouridine synthase bSAMEA3472108_00105Not AvailablePositive103627 - 10457135089.2
polynucleotide phosphorylaseSAMEA3472108_00108Not AvailablePositive105236 - 10737177106.6
lipoprotein nlpi precursorSAMEA3472108_00109Not AvailablePositive107480 - 10836433622.5
atp-dependent rna helicase (dead-box protein)SAMEA3472108_00110Not AvailablePositive108544 - 11043370580.6
tryptophan-specific transport proteinSAMEA3472108_00111Not AvailablePositive110587 - 11183144369.2
monooxygenaseSAMEA3472108_00112Not AvailableNegative111948 - 11295537131.4
putative peptidaseSAMEA3472108_00113Not AvailableNegative113036 - 11391432458.9
protease yhbuSAMEA3472108_00114Not AvailableNegative113923 - 11491837044.2
sterol-binding proteinSAMEA3472108_00115Not AvailablePositive115127 - 11565119673.0
putative acetyltransferaseSAMEA3472108_00116Not AvailablePositive115645 - 11614818534.8

Displaying genes 571 – 580 of 5043 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total