Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0406 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1414317 bp
Thymine Count
1409913 bp
Guanine Count
1434864 bp
Cytosine Count
1433688 bp
Genome Length
5693058 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
531 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrimidine transporter | SAMEA3472056_00477 | Not Available | Negative | 497868 - 499196 | 45540.4 |
| oxidoreductase, flavin:nadh component | SAMEA3472056_00478 | Not Available | Negative | 499217 - 499711 | 17748.3 |
| putative nadh dehydrogenase/nad(p)h nitroreductase (pyrimidine utilization protein e) | SAMEA3472056_00479 | Not Available | Negative | 499722 - 500312 | 21580.6 |
| alternative pyrimidine degradation pathway protein | SAMEA3472056_00480 | Not Available | Negative | 500322 - 501122 | 28914.8 |
| pyrimidine utilization protein c | SAMEA3472056_00481 | Not Available | Negative | 501130 - 501516 | 13763.6 |
| isochorismatase family protein ycdl | SAMEA3472056_00482 | Not Available | Negative | 501528 - 502223 | 25389.3 |
| monooxygenase ycdm | SAMEA3472056_00483 | Not Available | Negative | 502220 - 503311 | 40005.5 |
| transcriptional regulator ycdc | SAMEA3472056_00484 | Not Available | Positive | 503599 - 504237 | 23688.9 |
| trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase | SAMEA3472056_00485 | Not Available | Negative | 504277 - 508239 | 143863.0 |
| uncharacterised protein | SAMEA3472056_00486 | Not Available | Positive | 508297 - 508503 | 7648.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





