Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0406 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1414317 bp
Thymine Count
1409913 bp
Guanine Count
1434864 bp
Cytosine Count
1433688 bp
Genome Length
5693058 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
531 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme- a synthase | SAMEA3472056_00036 | Not Available | Negative | 38321 - 39199 | 31646.4 |
| apo-citrate lyase phosphoribosyl-dephospho-coa transferase | SAMEA3472056_00037 | Not Available | Negative | 39174 - 39725 | 20215.5 |
| citrate lyase subunit alpha | SAMEA3472056_00038 | Not Available | Negative | 39729 - 41261 | 55194.0 |
| citrate lyase subunit beta | SAMEA3472056_00039 | Not Available | Negative | 41272 - 42180 | 33141.6 |
| citrate lyase acyl carrier protein (citrate lyase gamma chain) | SAMEA3472056_00040 | Not Available | Negative | 42177 - 42473 | 10689.9 |
| citrate lyase synthetase | SAMEA3472056_00041 | Not Available | Negative | 42488 - 43546 | 40079.5 |
| sensor kinase dpib | SAMEA3472056_00042 | Not Available | Positive | 43926 - 45584 | 61647.7 |
| two-component response regulator | SAMEA3472056_00043 | Not Available | Positive | 45553 - 46233 | 25454.9 |
| c4-dicarboxylate transporter dcuc | SAMEA3472056_00044 | Not Available | Negative | 46274 - 47659 | 48442.3 |
| subunit of palmitoyl transferase for lipid a | SAMEA3472056_00045 | Not Available | Positive | 48248 - 48808 | 21800.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





