Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0406 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1414317 bp
Thymine Count
1409913 bp
Guanine Count
1434864 bp
Cytosine Count
1433688 bp
Genome Length
5693058 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
531 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| shikimate dehydrogenase | SAMEA3472056_05390 | Not Available | Negative | 5464458 - 5465276 | 29480.5 |
| ribosome maturation factor | SAMEA3472056_05391 | Not Available | Negative | 5465281 - 5465853 | 20643.7 |
| putative dna topoisomerase | SAMEA3472056_05392 | Not Available | Negative | 5465858 - 5466400 | 19873.9 |
| protein smg | SAMEA3472056_05393 | Not Available | Negative | 5466429 - 5466902 | 18484.2 |
| dna protecting protein dpra | SAMEA3472056_05394 | Not Available | Negative | 5466874 - 5467998 | 41005.3 |
| polypeptide deformylase | SAMEA3472056_05395 | Not Available | Positive | 5468128 - 5468637 | 19329.6 |
| methionyl-trna formyltransferase | SAMEA3472056_05396 | Not Available | Positive | 5468652 - 5469599 | 34142.4 |
| ribosomal rna small subunit methyltransferase b | SAMEA3472056_05397 | Not Available | Positive | 5469645 - 5470934 | 48380.3 |
| trk system potassium uptake protein trka | SAMEA3472056_05398 | Not Available | Positive | 5470956 - 5472332 | 50370.8 |
| large-conductance mechanosensitive channel | SAMEA3472056_05399 | Not Available | Positive | 5472462 - 5472872 | 14999.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





