Escherichia coli strain VREC0406

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain VREC0406 is a Gram-negative, rod-shaped bacterium that exhibits motility, facilitated by the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It is mesophilic, with an optimal growth temperature of 37°C, which aligns with the typical human body temperature. VREC0406 is host-associated and demonstrates a free-living biotic relationship across a diverse range of hosts, including Homo sapiens, Gallus gallus, Bos taurus, various mammals, and even plants such as Solanum lycopersicum and Brassica oleracea var. italica. This extensive host range underscores its ecological versatility and potential for interaction with multiple species. The strain is associated with a variety of health effects, primarily in humans, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). Additionally, it has been implicated in foodborne infections and complications such as septicemia and renal failure. The presence of only one replicon and two membranes signifies its classification within the Enterobacteriaceae family. These traits, combined with its pathogenicity, underscore the importance of E. coli strain VREC0406 in both clinical and ecological contexts. Its ability to inhabit diverse environments and host species reflects its adaptability and potential impact on public health, particularly in relation to food safety and disease transmission.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain VREC0406

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain VREC0406
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain VREC0406 genome assembly, contig:

Gene Summary

Adenine Count

1414317 bp

Thymine Count

1409913 bp

Guanine Count

1434864 bp

Cytosine Count

1433688 bp

Genome Length

5693058 bp

Protein-coding Genes

4968 genes

Non-Coding Genes

531 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
htdzSAMEA3472056_05245Not AvailablePositive5333376 - 533372912331.5
trhlSAMEA3472056_05246Not AvailablePositive5333837 - 53340979896.27
trheSAMEA3472056_05247Not AvailablePositive5334109 - 533489729314.2
trhkSAMEA3472056_05248Not AvailablePositive5334897 - 533616845264.5
htdoSAMEA3472056_05249Not AvailablePositive5336170 - 533663117219.4
putative plasmid transfer proteinSAMEA3472056_05250Not AvailablePositive5336621 - 533797648515.8
htdvSAMEA3472056_05251Not AvailablePositive5337984 - 533846618772.5
htdtSAMEA3472056_05252Not AvailablePositive5338480 - 533933731588.4
trhvSAMEA3472056_05253Not AvailablePositive5339347 - 534029733901.1
trhcSAMEA3472056_05254Not AvailablePositive5340306 - 5342987101519.0

Displaying genes 5141 – 5150 of 5499 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total