Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0406 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1414317 bp
Thymine Count
1409913 bp
Guanine Count
1434864 bp
Cytosine Count
1433688 bp
Genome Length
5693058 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
531 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative outer membrane protein assembly factor | SAMEA3472056_04780 | Not Available | Negative | 4888188 - 4889921 | 64799.7 |
| methionine sulfoxide reductase a | SAMEA3472056_04781 | Not Available | Positive | 4890127 - 4890765 | 23316.3 |
| putative transporter | SAMEA3472056_04783 | Not Available | Positive | 4891088 - 4892431 | 49765.6 |
| conserved protein, duf1107 family | SAMEA3472056_04784 | Not Available | Negative | 4892493 - 4892699 | 8072.24 |
| protein ytfj | SAMEA3472056_04785 | Not Available | Positive | 4893024 - 4893581 | 20618.9 |
| cysq protein | SAMEA3472056_04786 | Not Available | Negative | 4893571 - 4894311 | 27205.4 |
| bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein | SAMEA3472056_04787 | Not Available | Positive | 4894501 - 4896444 | 70803.9 |
| putative transcriptional regulator ytfh | SAMEA3472056_04788 | Not Available | Negative | 4896561 - 4896941 | 14094.0 |
| nad(p)h:quinone oxidoreductase | SAMEA3472056_04789 | Not Available | Positive | 4897030 - 4897890 | 29726.2 |
| membrane protein ytff | SAMEA3472056_04790 | Not Available | Positive | 4897999 - 4898964 | 35251.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





