Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0406 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1414317 bp
Thymine Count
1409913 bp
Guanine Count
1434864 bp
Cytosine Count
1433688 bp
Genome Length
5693058 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
531 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Hypothetical protein | SAMEA3472056_04524 | Not Available | Negative | 4621214 - 4621525 | 12091.3 |
| Holin protein | SAMEA3472056_04525 | Not Available | Negative | 4621530 - 4621736 | 7394.97 |
| uncharacterised protein | SAMEA3472056_04526 | Not Available | Positive | 4621778 - 4621897 | 4431.68 |
| cold shock-like protein cspf | SAMEA3472056_04528 | Not Available | Positive | 4623015 - 4623227 | 7563.18 |
| Antitermination protein q | SAMEA3472056_04529 | Not Available | Negative | 4623649 - 4624401 | 27828.6 |
| Hypothetical protein | SAMEA3472056_04530 | Not Available | Negative | 4624415 - 4625464 | 39277.5 |
| putative prophage protein | SAMEA3472056_04531 | Not Available | Negative | 4625811 - 4626062 | 9235.26 |
| Host killer protein | SAMEA3472056_04532 | Not Available | Negative | 4626279 - 4626434 | 5737.24 |
| toxin of the rele-relb toxin-antitoxin system | SAMEA3472056_04533 | Not Available | Negative | 4626506 - 4626793 | 11225.8 |
| antitoxin of the rele-relb toxin-antitoxin system and transcriptional repressor of relbef | SAMEA3472056_04534 | Not Available | Negative | 4626793 - 4627032 | 9072.01 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





