Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0406 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1414317 bp
Thymine Count
1409913 bp
Guanine Count
1434864 bp
Cytosine Count
1433688 bp
Genome Length
5693058 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
531 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribose operon repressor | SAMEA3472056_03670 | Not Available | Negative | 3676138 - 3677130 | 36614.1 |
| ribokinase | SAMEA3472056_03671 | Not Available | Negative | 3677134 - 3678063 | 32304.4 |
| d-ribose transporter subunit rbsb | SAMEA3472056_03672 | Not Available | Negative | 3678189 - 3679079 | 30940.2 |
| high-affinity ribose transport system permease protein rbsc | SAMEA3472056_03673 | Not Available | Negative | 3679104 - 3680069 | 33454.0 |
| high affinity ribose transport atp-binding protein rbsa | SAMEA3472056_03674 | Not Available | Negative | 3680074 - 3681579 | 55075.1 |
| d-ribose high-affinity transporter | SAMEA3472056_03675 | Not Available | Negative | 3681587 - 3682006 | 15284.4 |
| kup system potassium uptake protein | SAMEA3472056_03676 | Not Available | Negative | 3682173 - 3684041 | 69298.3 |
| regulatory atpase rava | SAMEA3472056_03677 | Not Available | Positive | 3684264 - 3685760 | 56392.1 |
| protein viaa (vwa domain protein interacting with aaa atpase) | SAMEA3472056_03678 | Not Available | Positive | 3685754 - 3687205 | 55910.6 |
| aspartate--ammonia ligase (asparagine synthetase a) | SAMEA3472056_03679 | Not Available | Negative | 3687210 - 3688202 | 36652.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





