Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain VREC0376 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1354521 bp
Thymine Count
1357943 bp
Guanine Count
1361318 bp
Cytosine Count
1368393 bp
Genome Length
5442589 bp
Protein-coding Genes
4834 genes
Non-Coding Genes
462 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transposase | SAMEA3472044_04386 | Not Available | Positive | 4365824 - 4366171 | 13263.5 |
| transposase | SAMEA3472044_04387 | Not Available | Positive | 4366201 - 4366458 | 9976.21 |
| t3ss effector nlef | SAMEA3472044_04388 | Not Available | Negative | 4366505 - 4367074 | 21375.1 |
| t3ss secreted effector nleh-like protein | SAMEA3472044_04389 | Not Available | Negative | 4367140 - 4368051 | 33707.6 |
| integrase | SAMEA3472044_04390 | Not Available | Positive | 4368525 - 4369217 | 25504.4 |
| flagellin | SAMEA3472044_04392 | Not Available | Positive | 4370517 - 4372274 | 59956.8 |
| rna polymerase sigma factor for flagellar operon | SAMEA3472044_04393 | Not Available | Positive | 4372595 - 4373314 | 27549.8 |
| fliz protein | SAMEA3472044_04394 | Not Available | Positive | 4373360 - 4373911 | 21558.0 |
| cystine transporter subunit | SAMEA3472044_04395 | Not Available | Positive | 4373942 - 4374799 | 31040.2 |
| d-cysteine desulfhydrase | SAMEA3472044_04396 | Not Available | Positive | 4374904 - 4375890 | 35155.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





