Bradyrhizobium elkanii strain Semia 938

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium elkanii strain Semia 938 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella. This strain is specifically associated with brown seeds, indicating a particular ecological niche where it thrives. It is known to form symbiotic relationships with specific host plants, primarily Glycine max (soybean) and Acacia confusa, which are crucial for nitrogen fixation in agriculture and ecosystems. The genome of Bradyrhizobium elkanii strain Semia 938 consists of a single replicon, which is a notable feature among bacteria, as it suggests a streamlined genetic organization. This could potentially impact its adaptability and efficiency in symbiotic relationships with its host plants, particularly in environments where nitrogen is limited. The association of strain Semia 938 with Glycine max is particularly significant, as soybean is a major crop worldwide, contributing to food security and agricultural sustainability. The ability of this strain to effectively fix nitrogen in association with its hosts enhances soil fertility and promotes plant growth, making it an important biological agent in agricultural practices. In summary, Bradyrhizobium elkanii strain Semia 938's traits, including its Gram-negative nature, rod shape, flagellar motility, and symbiotic relationships with Glycine max and Acacia confusa, underscore its ecological role in nitrogen fixation and its potential benefits to agriculture. The strain’s efficiency in forming symbiosis with these plants highlights its importance in sustainable agricultural practices and soil health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium elkanii
Strainstrain Semia 938

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bradyrhizobium elkanii strain Semia 938
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatbrown seeds
Biotic relationshipNot Available
Host(s)Glycine max, Acacia confusa, Avena strigosa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium elkanii strain Semia 938 scaffold80.1, whole genome

Gene Summary

Adenine Count

1592184 bp

Thymine Count

1580409 bp

Guanine Count

2788936 bp

Cytosine Count

2818502 bp

Genome Length

8780064 bp

Protein-coding Genes

7852 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFDV58_00405Not AvailablePositive100989 - 1011806982.41
precorrin-6a synthase (deacetylating)FDV58_00410Not AvailableNegative101217 - 10196626999.6
uroporphyrinogen-iii c-methyltransferaseFDV58_00415Not AvailableNegative101974 - 10270224836.9
cobyrinate a,c-diamide synthaseFDV58_00420Not AvailableNegative102699 - 10400945799.0
precorrin-4 c(11)-methyltransferaseFDV58_00425Not AvailableNegative104006 - 10480327815.5
cobalamin biosynthesis proteinFDV58_00430Not AvailableNegative104800 - 10518312672.2
precorrin-6y c5,15-methyltransferase (decarboxylating) subunit cbieFDV58_00435Not AvailableNegative105165 - 10634641711.9
cobalt-precorrin-6a reductaseFDV58_00440Not AvailablePositive106345 - 10709426661.2
precorrin-3b c(17)-methyltransferaseFDV58_00445Not AvailableNegative107070 - 10780426043.4
precorrin-2 c(20)-methyltransferaseFDV58_00450Not AvailableNegative107801 - 10853226907.6

Displaying genes 81 – 90 of 7910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

340 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 340 metabolites

Health Effects

No health effects information available for this bacterium.