Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv toxin-antitoxin system yeeu family antitoxin | FCU55_24430 | Not Available | Positive | 4915740 - 4916108 | 13625.2 |
| toxin | FCU55_24435 | Not Available | Positive | 4916198 - 4916575 | 14145.1 |
| hypothetical protein | FCU55_24440 | Not Available | Positive | 4916572 - 4917060 | 18032.6 |
| duf957 domain-containing protein | FCU55_24445 | Not Available | Positive | 4917077 - 4917253 | 6495.66 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | FCU55_24525 | Not Available | Negative | 4927615 - 4928898 | 46210.6 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | FCU55_24530 | Not Available | Negative | 4928969 - 4930057 | 39773.4 |
| duf421 domain-containing protein | FCU55_24535 | Not Available | Negative | 4930256 - 4930948 | 26269.4 |
| 30s ribosomal protein s12 methylthiotransferase accessory protein ycao | FCU55_24540 | Not Available | Positive | 4931078 - 4932838 | 65672.0 |
| formate transporter foca | FCU55_24545 | Not Available | Positive | 4933244 - 4934101 | 31006.6 |
| porin family protein | FCU55_24630 | Not Available | Negative | 4947885 - 4948625 | 27208.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





