Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| voltage-gated clc-type chloride channel clcb | FCU55_20440 | Not Available | Positive | 4150103 - 4151395 | 45631.0 |
| atp-dependent dethiobiotin synthetase biod | FCU55_20445 | Not Available | Negative | 4151348 - 4152043 | 24968.4 |
| dna-binding transcriptional repressor mlc | FCU55_20450 | Not Available | Negative | 4152168 - 4153388 | 44292.7 |
| lysr family transcriptional regulator | FCU55_20455 | Not Available | Negative | 4153523 - 4154416 | 33333.4 |
| mfs transporter | FCU55_20460 | Not Available | Positive | 4154523 - 4155776 | 45220.2 |
| acid shock protein | FCU55_20465 | Not Available | Positive | 4156173 - 4156508 | 11579.1 |
| hypothetical protein | FCU55_20470 | Not Available | Positive | 4156601 - 4156684 | 3206.2 |
| serine protease | FCU55_20475 | Not Available | Positive | 4156784 - 4157605 | 29250.6 |
| multidrug/spermidine efflux smr transporter subunit mdti | FCU55_20480 | Not Available | Negative | 4157644 - 4157973 | 11720.8 |
| multidrug/spermidine efflux smr transporter subunit mdtj | FCU55_20485 | Not Available | Negative | 4157960 - 4158325 | 13115.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





