Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator | FCU55_18600 | Not Available | Positive | 3805316 - 3805960 | 24652.3 |
| tonb-dependent receptor | FCU55_18605 | Not Available | Negative | 3806331 - 3808478 | 79181.7 |
| hypothetical protein | FCU55_18610 | Not Available | Negative | 3808585 - 3808782 | 7688.51 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | FCU55_18625 | Not Available | Positive | 3810150 - 3810695 | 20195.2 |
| adenosylcobinamide-gdp ribazoletransferase | FCU55_18630 | Not Available | Positive | 3810692 - 3811435 | 26431.4 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | FCU55_18635 | Not Available | Positive | 3811447 - 3812526 | 36862.2 |
| l,d-transpeptidase | FCU55_18640 | Not Available | Positive | 3812588 - 3813523 | 34447.3 |
| Trna-asn | Not Available | Not Available | Positive | 3813579 - 3813654 | Not Available |
| nitrogen assimilation transcriptional regulator | FCU55_18650 | Not Available | Positive | 3813981 - 3814898 | 32766.9 |
| hth-type transcriptional regulator cbl | FCU55_18655 | Not Available | Positive | 3815000 - 3815950 | 35858.1 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





