Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | FCU55_18430 | Not Available | Negative | 3775572 - 3776402 | 30324.0 |
| sugar-binding transcriptional regulator | FCU55_18435 | Not Available | Positive | 3776765 - 3777715 | 34452.5 |
| carbohydrate kinase | FCU55_18440 | Not Available | Positive | 3778066 - 3779586 | 54545.1 |
| substrate-binding domain-containing protein | FCU55_18445 | Not Available | Positive | 3779690 - 3780625 | 33232.1 |
| duf2291 domain-containing protein | FCU55_18450 | Not Available | Positive | 3780672 - 3781292 | 22510.0 |
| sugar abc transporter atp-binding protein | FCU55_18455 | Not Available | Positive | 3781294 - 3782838 | 56861.1 |
| abc transporter permease | FCU55_18460 | Not Available | Positive | 3782856 - 3783923 | 37590.6 |
| sdr family oxidoreductase | FCU55_18465 | Not Available | Positive | 3783977 - 3784774 | 29115.7 |
| sdr family oxidoreductase | FCU55_18470 | Not Available | Positive | 3784807 - 3785592 | 28029.6 |
| aaa family atpase | FCU55_18475 | Not Available | Positive | 3785678 - 3786070 | 14338.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





