Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-alanyl-d-alanine carboxypeptidase daca | FCU55_18175 | Not Available | Positive | 3722133 - 3723344 | 44446.5 |
| duf493 family protein | FCU55_18180 | Not Available | Positive | 3723454 - 3723717 | 9827.92 |
| lipoyl(octanoyl) transferase lipb | FCU55_18185 | Not Available | Positive | 3723818 - 3724459 | 23898.0 |
| lipoyl synthase | FCU55_18195 | Not Available | Positive | 3725484 - 3726449 | 36073.8 |
| twin-arginine translocase subunit tate | FCU55_18200 | Not Available | Negative | 3726549 - 3726752 | 7024.71 |
| deaminated glutathione amidase | FCU55_18205 | Not Available | Negative | 3726881 - 3727669 | 28706.1 |
| fluoride efflux transporter crcb | FCU55_18210 | Not Available | Positive | 3727762 - 3728145 | 13766.1 |
| transcription antiterminator/rna stability regulator cspe | FCU55_18215 | Not Available | Negative | 3728199 - 3728408 | 7463.84 |
| phospholipid:lipid a palmitoyltransferase | FCU55_18220 | Not Available | Negative | 3728583 - 3729143 | 21817.6 |
| anaerobic c4-dicarboxylate transporter dcuc | FCU55_18225 | Not Available | Positive | 3729730 - 3731115 | 48415.3 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





