Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-lactate dehydrogenase | FCU55_17870 | Not Available | Negative | 3663954 - 3664943 | 36522.8 |
| ydbh family protein | FCU55_17875 | Not Available | Positive | 3665151 - 3667790 | 96772.1 |
| ynbe family lipoprotein | FCU55_17880 | Not Available | Positive | 3667787 - 3667972 | 6840.53 |
| duf1318 domain-containing protein | FCU55_17885 | Not Available | Positive | 3667980 - 3668306 | 11994.5 |
| phenylacetic acid degradation protein paay | FCU55_17895 | Not Available | Positive | 3668764 - 3668955 | 6790.4 |
| autotransporter domain-containing protein | FCU55_17900 | Not Available | Positive | 3669384 - 3670261 | 30590.1 |
| glutamine--trna ligase | FCU55_17905 | Not Available | Negative | 3670791 - 3672455 | 63497.3 |
| deor/glpr transcriptional regulator | FCU55_17910 | Not Available | Negative | 3672675 - 3673436 | 27921.6 |
| d-threonate 4-phosphate dehydrogenase | FCU55_17915 | Not Available | Negative | 3673438 - 3674424 | 35197.1 |
| four-carbon acid sugar kinase family protein | FCU55_17920 | Not Available | Negative | 3674417 - 3675652 | 43977.2 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





