Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2534 family protein | FCU55_17755 | Not Available | Positive | 3641932 - 3642189 | 9339.82 |
| universal stress protein uspe | FCU55_17760 | Not Available | Negative | 3642239 - 3643189 | 35708.9 |
| fumarate/nitrate reduction transcriptional regulator fnr | FCU55_17765 | Not Available | Negative | 3643341 - 3644093 | 27968.9 |
| methylated-dna--[protein]-cysteine s-methyltransferase | FCU55_17770 | Not Available | Negative | 3644288 - 3644803 | 19180.2 |
| arac family transcriptional regulator | FCU55_17780 | Not Available | Negative | 3645346 - 3646161 | 30556.3 |
| hlyd family secretion protein | FCU55_17785 | Not Available | Positive | 3646258 - 3647286 | 37749.3 |
| dha2 family efflux mfs transporter permease subunit | FCU55_17790 | Not Available | Positive | 3647286 - 3648797 | 55450.6 |
| dna endonuclease smra | FCU55_17795 | Not Available | Positive | 3648992 - 3649555 | 21573.8 |
| diguanylate cyclase dgcm | FCU55_17800 | Not Available | Negative | 3649576 - 3650808 | 46557.9 |
| zinc transporter zntb | FCU55_17805 | Not Available | Positive | 3651063 - 3652046 | 36614.3 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





