Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sugar abc transporter permease yjff | FCU55_16920 | Not Available | Negative | 3483639 - 3484634 | 35008.0 |
| abc transporter permease | FCU55_16925 | Not Available | Negative | 3484621 - 3485643 | 35479.0 |
| sugar abc transporter atp-binding protein | FCU55_16930 | Not Available | Negative | 3485657 - 3487159 | 55245.4 |
| galactofuranose abc transporter substrate-binding protein ytfq | FCU55_16935 | Not Available | Negative | 3487299 - 3488255 | 34314.5 |
| inorganic diphosphatase | FCU55_16940 | Not Available | Positive | 3488565 - 3489095 | 19704.6 |
| endoribonuclease toxin chpb | FCU55_16945 | Not Available | Negative | 3489175 - 3489525 | 12512.2 |
| type ii toxin-antitoxin system chps family antitoxin | FCU55_16950 | Not Available | Negative | 3489519 - 3489770 | 9272.12 |
| gamma-glutamylcyclotransferase | FCU55_16955 | Not Available | Negative | 3489982 - 3490323 | 12867.2 |
| autotransporter assembly complex protein tamb | FCU55_16960 | Not Available | Negative | 3490326 - 3494105 | 136894.0 |
| autotransporter assembly complex protein tama | FCU55_16965 | Not Available | Negative | 3494102 - 3495835 | 64799.7 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





