Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| argininosuccinate lyase | FCU55_16625 | Not Available | Positive | 3423256 - 3424629 | 50264.1 |
| dna-binding transcriptional regulator oxyr | FCU55_16630 | Not Available | Positive | 3424896 - 3425813 | 34278.0 |
| si-specific nad(p)(+) transhydrogenase | FCU55_16635 | Not Available | Negative | 3425796 - 3427196 | 51563.4 |
| amidohydrolase | FCU55_16640 | Not Available | Positive | 3427526 - 3428692 | 42210.6 |
| mfs transporter | FCU55_16645 | Not Available | Positive | 3428735 - 3430051 | 47097.5 |
| hth-type transcriptional repressor fabr | FCU55_16650 | Not Available | Positive | 3430155 - 3430805 | 24536.5 |
| yijd family membrane protein | FCU55_16655 | Not Available | Positive | 3430805 - 3431164 | 13010.3 |
| trna (uridine(54)-c5)-methyltransferase trma | FCU55_16660 | Not Available | Negative | 3431204 - 3432304 | 41885.3 |
| tonb-dependent vitamin b12 receptor btub | FCU55_16665 | Not Available | Positive | 3432673 - 3434517 | 68439.8 |
| glutamate racemase | FCU55_16670 | Not Available | Positive | 3434462 - 3435319 | 31219.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





