Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flavodoxin | FCU55_15595 | Not Available | Positive | 3211789 - 3212238 | 16316.2 |
| mfs transporter | FCU55_15600 | Not Available | Positive | 3212672 - 3214024 | 49145.0 |
| glucarate dehydratase | FCU55_15605 | Not Available | Positive | 3214026 - 3215366 | 48854.4 |
| glucarate dehydratase | FCU55_15610 | Not Available | Positive | 3215387 - 3216727 | 49123.9 |
| two-component sensor histidine kinase bara | FCU55_15615 | Not Available | Negative | 3216958 - 3219714 | 102505.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | FCU55_15620 | Not Available | Positive | 3219771 - 3221072 | 48045.0 |
| gtp pyrophosphokinase | FCU55_15625 | Not Available | Positive | 3221120 - 3223354 | 83880.4 |
| nucleoside triphosphate pyrophosphohydrolase | FCU55_15630 | Not Available | Positive | 3223450 - 3224241 | 30395.9 |
| ctp synthase (glutamine hydrolyzing) | FCU55_15635 | Not Available | Positive | 3224469 - 3226106 | 60377.7 |
| phosphopyruvate hydratase | FCU55_15640 | Not Available | Positive | 3226194 - 3227492 | 45657.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





