Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar basal body m-ring protein flif | FCU55_14185 | Not Available | Negative | 2957723 - 2959381 | 60533.7 |
| flagellar hook-basal body complex protein flie | FCU55_14190 | Not Available | Positive | 2959596 - 2959910 | 11127.5 |
| hypothetical protein | FCU55_14195 | Not Available | Negative | 2959942 - 2960154 | 8282.45 |
| smr family multidrug efflux protein emre | FCU55_14200 | Not Available | Positive | 2960254 - 2960586 | 11915.0 |
| raf kinase inhibitor-like protein ybcl | FCU55_14205 | Not Available | Positive | 2960755 - 2961306 | 19391.8 |
| helix-turn-helix transcriptional regulator | FCU55_14210 | Not Available | Positive | 2961316 - 2962113 | 30707.4 |
| is200/is605 family transposase | FCU55_14215 | Not Available | Negative | 2962270 - 2962794 | 20007.3 |
| transposase | FCU55_14220 | Not Available | Positive | 2962817 - 2963146 | 12946.6 |
| hypothetical protein | FCU55_14225 | Not Available | Negative | 2963028 - 2963525 | 18709.2 |
| sulfurtransferase-like selenium metabolism protein yedf | FCU55_14230 | Not Available | Negative | 2963634 - 2963867 | 8639.5 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





