Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator argr | FCU55_12805 | Not Available | Negative | 2688019 - 2688489 | 17009.5 |
| malate dehydrogenase | FCU55_12810 | Not Available | Positive | 2688924 - 2689862 | 32339.2 |
| outer membrane-stress sensor serine endopeptidase degs | FCU55_12815 | Not Available | Negative | 2689925 - 2690992 | 37656.6 |
| serine endoprotease degq | FCU55_12820 | Not Available | Negative | 2691082 - 2692449 | 47263.0 |
| duf1043 family protein | FCU55_12825 | Not Available | Negative | 2692603 - 2693001 | 14961.7 |
| cell division protein zape | FCU55_12830 | Not Available | Positive | 2693195 - 2694322 | 43087.2 |
| 50s ribosomal protein l13 | FCU55_12835 | Not Available | Positive | 2694542 - 2694970 | 16019.5 |
| 30s ribosomal protein s9 | FCU55_12840 | Not Available | Positive | 2694986 - 2695378 | 14857.1 |
| stringent starvation protein a | FCU55_12845 | Not Available | Positive | 2695773 - 2696411 | 24306.3 |
| clpxp protease specificity-enhancing factor | FCU55_12850 | Not Available | Positive | 2696417 - 2696914 | 18247.4 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





