Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | FCU55_12705 | Not Available | Positive | 2663107 - 2664096 | 34976.1 |
| sugar kinase | FCU55_12710 | Not Available | Positive | 2664118 - 2665080 | 34833.7 |
| duf4432 family protein | FCU55_12715 | Not Available | Positive | 2665077 - 2666123 | 38708.8 |
| acetyl-coa carboxylase biotin carboxylase subunit | FCU55_12720 | Not Available | Negative | 2666215 - 2667564 | 49353.7 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | FCU55_12725 | Not Available | Negative | 2667575 - 2668045 | 16688.2 |
| oxidoreductase | FCU55_12730 | Not Available | Negative | 2669022 - 2669996 | 34709.9 |
| rnase e specificity factor csrd | FCU55_12735 | Not Available | Positive | 2670148 - 2672088 | 73435.9 |
| rod shape-determining protein | FCU55_12740 | Not Available | Positive | 2672393 - 2673436 | 36954.7 |
| rod shape-determining protein mrec | FCU55_12745 | Not Available | Positive | 2673502 - 2674605 | 39590.9 |
| rod shape-determining protein mred | FCU55_12750 | Not Available | Positive | 2674605 - 2675093 | 18788.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





