Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate dehydrogenase | FCU55_12550 | Not Available | Positive | 2629353 - 2630300 | 34341.7 |
| type vi secretion system protein vasl | FCU55_12555 | Not Available | Negative | 2630600 - 2631976 | 51935.5 |
| type vi secretion system baseplate subunit tsse | FCU55_12560 | Not Available | Negative | 2631976 - 2632404 | 16345.9 |
| type vi secretion system lipoprotein tssj | FCU55_12565 | Not Available | Negative | 2632408 - 2632944 | 20531.0 |
| type vi secretion system baseplate subunit tssg | FCU55_12570 | Not Available | Negative | 2632925 - 2634004 | 39436.7 |
| type vi secretion system baseplate subunit tssf | FCU55_12575 | Not Available | Negative | 2633968 - 2635728 | 67233.3 |
| hypothetical protein | FCU55_12580 | Not Available | Negative | 2635804 - 2636208 | 14893.8 |
| hypothetical protein | FCU55_12585 | Not Available | Negative | 2636288 - 2636710 | 15975.1 |
| paar domain-containing protein | FCU55_12590 | Not Available | Negative | 2636703 - 2638121 | 52328.6 |
| type vi secretion system protein tssa | FCU55_12595 | Not Available | Negative | 2638127 - 2639737 | 59974.0 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





