Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (uracil(1498)-n(3))-methyltransferase | FCU55_11935 | Not Available | Negative | 2492708 - 2493439 | 26979.7 |
| deoxyribonuclease i | FCU55_11940 | Not Available | Negative | 2493519 - 2494226 | 26710.5 |
| sprt family zinc-dependent metalloprotease | FCU55_11945 | Not Available | Negative | 2494321 - 2494818 | 19336.6 |
| sugar porter family mfs transporter | FCU55_11950 | Not Available | Negative | 2494895 - 2496289 | 50985.6 |
| methionine adenosyltransferase | FCU55_11955 | Not Available | Negative | 2496725 - 2497879 | 41954.0 |
| acid stress response protein yqgb | FCU55_11960 | Not Available | Positive | 2498534 - 2498665 | 4859.08 |
| biosynthetic arginine decarboxylase | FCU55_11965 | Not Available | Positive | 2498674 - 2500650 | 73890.6 |
| hypothetical protein | FCU55_11970 | Not Available | Positive | 2500796 - 2501527 | 26324.7 |
| agmatinase | FCU55_11975 | Not Available | Positive | 2501663 - 2502583 | 33572.9 |
| metalloprotease | FCU55_11980 | Not Available | Negative | 2502900 - 2503658 | 26862.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





