Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain SIEC109 118_NODE_121 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1311805 bp
Thymine Count
1311896 bp
Guanine Count
1349242 bp
Cytosine Count
1350124 bp
Genome Length
5323067 bp
Protein-coding Genes
4778 genes
Non-Coding Genes
460 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarate hydratase fumd | FCU55_11780 | Not Available | Positive | 2464854 - 2465063 | 7907.85 |
| ferredoxin-like protein | FCU55_11785 | Not Available | Positive | 2465519 - 2466145 | 22357.2 |
| hypothetical protein | FCU55_11795 | Not Available | Negative | 2467784 - 2467845 | 2293.74 |
| hypothetical protein | FCU55_11800 | Not Available | Negative | 2468021 - 2468251 | 8328.34 |
| tetratricopeptide repeat protein | FCU55_11805 | Not Available | Negative | 2468394 - 2469437 | 40231.8 |
| duf4102 domain-containing protein | FCU55_11810 | Not Available | Negative | 2469693 - 2470958 | 47977.0 |
| Trna-phe | Not Available | Not Available | Positive | 2471156 - 2471231 | Not Available |
| duf554 domain-containing protein | FCU55_11820 | Not Available | Negative | 2471337 - 2472044 | 24645.5 |
| ornithine decarboxylase | FCU55_11825 | Not Available | Positive | 2472437 - 2474572 | 79479.7 |
| nucleoside permease | FCU55_11830 | Not Available | Negative | 2474621 - 2475877 | 46378.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





