Escherichia coli strain SIEC109 118_NODE_121

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SIEC109 (118_NODE_121) is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and capable of mobility due to the presence of flagella. This strain is primarily associated with various hosts, including Homo sapiens, Gallus gallus, and multiple other vertebrates and invertebrates, indicating its broad ecological and biological versatility. With a mesophilic optimal growth temperature of 37°C, strain SIEC109 thrives in temperature ranges conducive to warm-blooded hosts. Its habitat is classified as host-associated, suggesting a close relationship with its hosts, where it can exhibit free-living behaviors as well. SIEC109 is linked to numerous health effects, particularly in humans, where it is known to cause urinary tract infections (UTIs), gastrointestinal infections, and severe conditions like neonatal meningitis and hemolytic uremic syndrome (HUS). This pathogenicity underscores its significance in medical microbiology, as it can lead to a variety of diseases, including diarrhea, peritonitis, and even food poisoning. The strain's extensive list of health effects highlights its role as a significant opportunistic pathogen, particularly in vulnerable populations such as neonates and individuals with weakened immune systems. Given its diverse range of hosts and pathogenic potential, E. coli strain SIEC109 serves as a critical example of how microbial interactions can influence health outcomes across species. Understanding its ecological dynamics and pathogenic mechanisms can provide valuable insights into managing its associated health risks in both human and animal populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SIEC109 118_NODE_121

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SIEC109 118_NODE_121
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SIEC109 118_NODE_121, whole genome shotgun

Gene Summary

Adenine Count

1311805 bp

Thymine Count

1311896 bp

Guanine Count

1349242 bp

Cytosine Count

1350124 bp

Genome Length

5323067 bp

Protein-coding Genes

4778 genes

Non-Coding Genes

460 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
divalent metal cation transporterFCU55_05630Not AvailablePositive1155952 - 115723245616.5
fad-binding proteinFCU55_05635Not AvailablePositive1157243 - 115927975049.0
quinone oxidoreductaseFCU55_05640Not AvailablePositive1159385 - 116036835233.3
envelope stress response protein pspgFCU55_05645Not AvailableNegative1160533 - 11607759066.98
trna dihydrouridine(20/20a) synthase dusaFCU55_05650Not AvailableNegative1160909 - 116190436905.3
zinc uptake transcriptional repressor zurFCU55_05655Not AvailablePositive1162060 - 116257519308.3
csbd family proteinFCU55_05660Not AvailableNegative1162617 - 11628268349.69
mate family efflux transporter dinfFCU55_05665Not AvailableNegative1162942 - 116426747735.0
repressor lexaFCU55_05670Not AvailableNegative1164340 - 116494822359.1
diacylglycerol kinaseFCU55_05675Not AvailableNegative1165058 - 116542613257.5

Displaying genes 1491 – 1500 of 5238 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total