Escherichia coli strain SIEC018 19_NODE_118

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SIEC018 19_NODE_118 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic lifestyle, thriving optimally at 37°C within a mesophilic temperature range. It is characterized by its ability to move, facilitated by the presence of flagella, and typically exists in pairs or as single cells. The strain possesses a single replicon and is enveloped by two membranes, a common trait among Gram-negative bacteria. This strain is notably associated with a wide range of hosts, including Homo sapiens, various livestock (such as Bos taurus and Gallus gallus), and several other species across the animal kingdom, including mammals, birds, and even some invertebrates. This broad host range suggests that E. coli SIEC018 has adapted to diverse biological environments, indicating its ecological versatility. E. coli SIEC018 is recognized for its pathogenic potential in humans, being linked to numerous health complications, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as hemorrhagic colitis and hemolytic uremic syndrome (HUS). The strain poses risks not only through foodborne infections but also through infections that can lead to complications such as neonatal meningitis and peritonitis. The ecological insight drawn from the traits of E. coli SIEC018 emphasizes its role as a free-living organism that can thrive in various host-associated environments, reinforcing the importance of monitoring such pathogens in both clinical and agricultural settings to prevent transmission and outbreaks.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SIEC018 19_NODE_118

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SIEC018 19_NODE_118
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SIEC018 19_NODE_118, whole genome shotgun

Gene Summary

Adenine Count

1252537 bp

Thymine Count

1254793 bp

Guanine Count

1275978 bp

Cytosine Count

1286764 bp

Genome Length

5070072 bp

Protein-coding Genes

4580 genes

Non-Coding Genes

284 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protease sohbFCU47_08110Not AvailableNegative1687002 - 168805139368.7
ycik family oxidoreductaseFCU47_08115Not AvailablePositive1688271 - 168902927947.6
cob(i)yrinic acid a,c-diamide adenosyltransferaseFCU47_08120Not AvailablePositive1689026 - 168961622014.2
23s rrna pseudouridine(2605) synthase rlubFCU47_08125Not AvailableNegative1689656 - 169052832599.3
threonylcarbamoyl-amp synthaseFCU47_08130Not AvailableNegative1690629 - 169124923213.2
5'-3' exoribonucleaseFCU47_08135Not AvailableNegative1691246 - 169212732581.8
trp operon leader peptideFCU47_08140Not AvailablePositive1692265 - 16923091723.19
anthranilate synthase component iFCU47_08145Not AvailablePositive1692400 - 169396257594.9
bifunctional anthranilate synthase glutamate amidotransferase component trpg/anthranilate phosphoribosyltransferase trpdFCU47_08150Not AvailablePositive1693962 - 169555756873.4
bifunctional indole-3-glycerol-phosphate synthase trpc/phosphoribosylanthranilate isomerase trpfFCU47_08155Not AvailablePositive1695561 - 169691949345.9

Displaying genes 1781 – 1790 of 4864 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total