Escherichia coli K-12 strain SIEC033 34_NODE_141

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli K-12 strain SIEC033 34_NODE_141 is a Gram-negative bacterium characterized by its rod shape and motility, facilitated by the presence of flagella. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both the presence and absence of oxygen. Its optimal growth temperature is 37°C, which is consistent with its mesophilic nature, allowing it to flourish within a moderate temperature range. In terms of cellular organization, E. coli K-12 SIEC033 exhibits a cell arrangement that includes both singles and pairs. The strain possesses a single replicon, which is indicative of its chromosomal structure, and is surrounded by two membranes, a characteristic feature of Gram-negative bacteria. Ecologically, E. coli K-12 strain SIEC033 is noted for its free-living biotic relationship, suggesting that it can exist independently in various environments, likely associated with host organisms. This adaptability to host-associated habitats underscores the strain's significance in both environmental microbiology and its role in the gut microbiome of many organisms. The accession number for this strain is SSZJ00000000.1, which provides a reference for further research and exploration of its genetic and functional characteristics. Understanding the traits of E. coli K-12 SIEC033 contributes to the broader knowledge of microbial ecology and the implications of such bacteria in health and disease contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainK-12 strain SIEC033 34_NODE_141

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli K-12 strain SIEC033 34_NODE_141
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli K-12 strain SIEC033 34_NODE_141, whole genome

Gene Summary

Adenine Count

1195438 bp

Thymine Count

1197170 bp

Guanine Count

1230095 bp

Cytosine Count

1226712 bp

Genome Length

4849415 bp

Protein-coding Genes

4395 genes

Non-Coding Genes

224 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1481 domain-containing proteinFAM12_20350Not AvailablePositive4223708 - 422440326318.9
zinc resistance sensor/chaperone zrapFAM12_20355Not AvailableNegative4224405 - 422483015200.3
two-component system sensor histidine kinase zrasFAM12_20360Not AvailablePositive4225068 - 422646551034.9
sigma-54-dependent response regulator transcription factor zrarFAM12_20365Not AvailablePositive4226462 - 422778748397.4
phosphoribosylamine--glycine ligaseFAM12_20370Not AvailableNegative4227784 - 422907345943.0
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseFAM12_20375Not AvailableNegative4229085 - 423067457332.4
phosphate-starvation-inducible protein psieFAM12_20385Not AvailableNegative4232248 - 423265815597.7
hypothetical proteinFAM12_20390Not AvailablePositive4232928 - 423320610049.3
yjbh domain-containing proteinFAM12_20395Not AvailableNegative4233253 - 423534978495.0
hypothetical proteinFAM12_20400Not AvailableNegative4235349 - 423608626282.3

Displaying genes 3991 – 4000 of 4619 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.