Escherichia coli K-12 strain SIEC033 34_NODE_141

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli K-12 strain SIEC033 34_NODE_141 is a Gram-negative bacterium characterized by its rod shape and motility, facilitated by the presence of flagella. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both the presence and absence of oxygen. Its optimal growth temperature is 37°C, which is consistent with its mesophilic nature, allowing it to flourish within a moderate temperature range. In terms of cellular organization, E. coli K-12 SIEC033 exhibits a cell arrangement that includes both singles and pairs. The strain possesses a single replicon, which is indicative of its chromosomal structure, and is surrounded by two membranes, a characteristic feature of Gram-negative bacteria. Ecologically, E. coli K-12 strain SIEC033 is noted for its free-living biotic relationship, suggesting that it can exist independently in various environments, likely associated with host organisms. This adaptability to host-associated habitats underscores the strain's significance in both environmental microbiology and its role in the gut microbiome of many organisms. The accession number for this strain is SSZJ00000000.1, which provides a reference for further research and exploration of its genetic and functional characteristics. Understanding the traits of E. coli K-12 SIEC033 contributes to the broader knowledge of microbial ecology and the implications of such bacteria in health and disease contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainK-12 strain SIEC033 34_NODE_141

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli K-12 strain SIEC033 34_NODE_141
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli K-12 strain SIEC033 34_NODE_141, whole genome

Gene Summary

Adenine Count

1195438 bp

Thymine Count

1197170 bp

Guanine Count

1230095 bp

Cytosine Count

1226712 bp

Genome Length

4849415 bp

Protein-coding Genes

4395 genes

Non-Coding Genes

224 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFAM12_18545Not AvailableNegative3862127 - 386242311230.5
sensor domain-containing diguanylate cyclaseFAM12_18555Not AvailableNegative3862993 - 386396736518.4
duf305 domain-containing proteinFAM12_18565Not AvailableNegative3865900 - 386625013055.0
silver-binding protein sileFAM12_18570Not AvailableNegative3866394 - 386682515299.1
copper/silver sensor histidine kinase silsFAM12_18575Not AvailableNegative3867076 - 386855155846.5
copper/silver response regulator transcription factor silrFAM12_18580Not AvailableNegative3868544 - 386922425226.8
cu(+)/ag(+) efflux rnd transporter outer membrane channel silcFAM12_18585Not AvailablePositive3869414 - 387079951139.6
copper abc transporter substrate-binding proteinFAM12_18590Not AvailablePositive3870827 - 387118012635.2
cu(+)/ag(+) efflux rnd transporter periplasmic adaptor subunit silbFAM12_18595Not AvailablePositive3871294 - 387258647777.5
cu(+)/ag(+) efflux rnd transporter permease subunit silaFAM12_18600Not AvailablePositive3872597 - 3875743114735.0

Displaying genes 3651 – 3660 of 4619 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.