Escherichia coli K-12 strain 69 GCID_CRE_0140_NODE_157

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli K-12 strain 69 (GCID_CRE_0140_NODE_157) is a gram-negative, rod-shaped bacterium that typically exists in pairs or singles. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It is mesophilic, with an optimal growth temperature of 37°C, which is similar to the human body temperature, highlighting its association with host environments. E. coli K-12 strain 69 is characterized by its mobility, attributed to the presence of flagella, allowing it to navigate through its habitat. It has a unique biotic relationship as a free-living organism, indicating that it can survive independently, although it is often found in association with hosts. The strain possesses one replicon and has a double membrane structure, typical of gram-negative bacteria. The ecological role of E. coli K-12 strain 69 is significant, as it is commonly found in the intestines of warm-blooded organisms, contributing to nutrient absorption and gut health. Its adaptability to various oxygen conditions and its mobility enhance its ability to colonize different niches within the host. The strain's genomic data, represented by accession number SSUV00000000.1, supports further research into its genetic characteristics and potential applications in biotechnology and microbiology. Overall, this strain exemplifies the complex interactions between bacteria and their hosts, serving crucial functions in both health and disease contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainK-12 strain 69 GCID_CRE_0140_NODE_157

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli K-12 strain 69 GCID_CRE_0140_NODE_157
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli K-12 strain 69 GCID_CRE_0140_NODE_157, whole

Gene Summary

Adenine Count

1291399 bp

Thymine Count

1303361 bp

Guanine Count

1335777 bp

Cytosine Count

1320737 bp

Genome Length

5251274 bp

Protein-coding Genes

4618 genes

Non-Coding Genes

462 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinFAZ86_08675Not AvailableNegative1798464 - 179878111907.3
Winged helix-turn-helix transcriptional regulatorFAZ86_08680Not AvailableNegative1798771 - 17990199293.25
Hypothetical proteinFAZ86_08685Not AvailableNegative1799030 - 179961121999.2
Hypothetical proteinFAZ86_08690Not AvailableNegative1799617 - 17998057065.28
Hypothetical proteinFAZ86_08695Not AvailableNegative1800000 - 18002067576.78
hypothetical proteinFAZ86_08700Not AvailablePositive1800346 - 18006069678.64
Hypothetical proteinFAZ86_08705Not AvailableNegative1800497 - 180099718438.1
Putative lambda repressorFAZ86_08710Not AvailableNegative1801101 - 180175724461.0
Hypothetical proteinFAZ86_08715Not AvailablePositive1801869 - 18020968376.04
Hypothetical proteinFAZ86_08720Not AvailablePositive1802093 - 180280026959.6

Displaying genes 41 – 50 of 5080 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.