Escherichia coli K-12 strain 71 GCID_CRE_0142_NODE_147

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli K-12 strain 71, identified by the accession number SSTS00000000.1, is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which contribute to its mobility. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, indicating a close relationship with various living organisms. E. coli K-12 strain 71 is mesophilic, with an optimal growth temperature of 37°C, which is consistent with the normal human body temperature, suggesting its adaptation to warm-blooded hosts. The bacterium exhibits a unique cellular arrangement, primarily found in singles and pairs, and possesses two membranes, a trait common to Gram-negative bacteria. It has a single replicon, simplifying its genetic organization. The ecological role of E. coli K-12 strain 71 is significant, as it is classified as free-living. This indicates that, while it has associations with hosts, it can also exist independently in the environment. The ability to adapt to various oxygen conditions and its mesophilic characteristics suggest that this strain plays a critical role in nutrient cycling and microbiome dynamics, particularly in gut ecosystems where it may contribute to metabolic activities and interactions with other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainK-12 strain 71 GCID_CRE_0142_NODE_147

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli K-12 strain 71 GCID_CRE_0142_NODE_147
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli K-12 strain 71 GCID_CRE_0142_NODE_147, whole

Gene Summary

Adenine Count

1187227 bp

Thymine Count

1193833 bp

Guanine Count

1212972 bp

Cytosine Count

1221420 bp

Genome Length

4815452 bp

Protein-coding Genes

4367 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidoglycan dd-transpeptidase mrdaFAZ82_20065Not AvailableNegative4115832 - 411773370860.6
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhFAZ82_20070Not AvailableNegative4117764 - 411823117342.1
ribosome silencing factorFAZ82_20075Not AvailableNegative4118235 - 411855211582.9
adenosylcobalamin/alpha-ribazole phosphataseFAZ82_20080Not AvailableNegative4118812 - 411942323325.8
nicotinate-nucleotide adenylyltransferaseFAZ82_20085Not AvailableNegative4119447 - 412008824529.3
dna polymerase iii subunit deltaFAZ82_20090Not AvailableNegative4120090 - 412112138702.0
lps assembly lipoprotein lpteFAZ82_20095Not AvailableNegative4121121 - 412170221357.8
leucine--trna ligaseFAZ82_20100Not AvailableNegative4121717 - 412429997241.0
zinc ribbon-containing proteinFAZ82_20105Not AvailablePositive4124534 - 412501618798.2
sel1 family tpr-like repeat protein ybeqFAZ82_20110Not AvailableNegative4125086 - 412606337110.8

Displaying genes 3931 – 3940 of 4579 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.