Escherichia coli K-12 strain 71 GCID_CRE_0142_NODE_147

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli K-12 strain 71, identified by the accession number SSTS00000000.1, is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which contribute to its mobility. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, indicating a close relationship with various living organisms. E. coli K-12 strain 71 is mesophilic, with an optimal growth temperature of 37°C, which is consistent with the normal human body temperature, suggesting its adaptation to warm-blooded hosts. The bacterium exhibits a unique cellular arrangement, primarily found in singles and pairs, and possesses two membranes, a trait common to Gram-negative bacteria. It has a single replicon, simplifying its genetic organization. The ecological role of E. coli K-12 strain 71 is significant, as it is classified as free-living. This indicates that, while it has associations with hosts, it can also exist independently in the environment. The ability to adapt to various oxygen conditions and its mesophilic characteristics suggest that this strain plays a critical role in nutrient cycling and microbiome dynamics, particularly in gut ecosystems where it may contribute to metabolic activities and interactions with other microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainK-12 strain 71 GCID_CRE_0142_NODE_147

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli K-12 strain 71 GCID_CRE_0142_NODE_147
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli K-12 strain 71 GCID_CRE_0142_NODE_147, whole

Gene Summary

Adenine Count

1187227 bp

Thymine Count

1193833 bp

Guanine Count

1212972 bp

Cytosine Count

1221420 bp

Genome Length

4815452 bp

Protein-coding Genes

4367 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcription/translation regulatory transformer protein rfahFAZ82_18015Not AvailablePositive3729822 - 373031018341.3
sec-independent protein translocase subunit tatcFAZ82_18025Not AvailableNegative3731131 - 373190728877.9
sec-independent protein translocase subunit tatbFAZ82_18030Not AvailableNegative3731910 - 373242518421.8
sec-independent protein translocase subunit tataFAZ82_18035Not AvailableNegative3732429 - 37326989664.5
ubiquinone biosynthesis regulatory protein kinase ubibFAZ82_18040Not AvailableNegative3732777 - 373441763206.4
ubiquinone biosynthesis protein ubijFAZ82_18045Not AvailableNegative3734414 - 373501922153.8
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieFAZ82_18050Not AvailableNegative3735033 - 373578828074.8
dna recombination protein rmucFAZ82_18055Not AvailableNegative3735883 - 373731054793.7
uridine phosphorylaseFAZ82_18060Not AvailableNegative3737451 - 373821227151.7
dienelactone hydrolase family proteinFAZ82_18065Not AvailablePositive3738474 - 373928929469.8

Displaying genes 3591 – 3600 of 4579 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.