Escherichia coli strain Broiler parent108

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain Broiler parent108 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. It is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments, with an optimal growth temperature of 37°C, categorizing it as mesophilic. This strain has a unique habitat association, being host-associated and demonstrating a free-living biotic relationship. E. coli strain Broiler parent108 has a diverse range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), and various other mammals, birds, and even some plants like Solanum lycopersicum (tomatoes) and Brassica oleracea var. italica (broccoli). This broad host range indicates its ecological versatility and adaptability across different environments. The strain is associated with numerous health effects in humans and animals, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as septicemia and hemolytic uremic syndrome (HUS). Its pathogenicity in humans highlights its significance as a public health concern, particularly in relation to foodborne illnesses and infections that can lead to serious complications. Understanding the ecological interactions and pathogenic potential of E. coli strain Broiler parent108 can inform food safety practices and public health strategies. The strain's ability to inhabit various hosts underscores the importance of monitoring E. coli in agricultural settings, as it may serve as a reservoir for pathogenic strains that can affect both animal and human health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain Broiler parent108

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain Broiler parent108
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain Broiler parent108

Gene Summary

Adenine Count

1286712 bp

Thymine Count

1285531 bp

Guanine Count

1324715 bp

Cytosine Count

1293848 bp

Genome Length

5190906 bp

Protein-coding Genes

4652 genes

Non-Coding Genes

304 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative selenium-binding protein ydfzEYY27_05215Not AvailableNegative1054011 - 10542147276.83
gntr family transcriptional regulatorEYY27_05220Not AvailableNegative1054391 - 105507726594.7
Hypothetical proteinEYY27_05225Not AvailableNegative1055166 - 105591227250.5
AttrNot AvailableNot AvailablePositive1060013 - 1060025Not Available
Host cell-killing modulation proteinEYY27_10340Not AvailablePositive2174857 - 21750697869.93
hypothetical proteinEYY27_10345Not AvailablePositive2175286 - 21755379277.3
Hypothetical proteinEYY27_10350Not AvailablePositive2175604 - 217588211321.4
Hypothetical proteinEYY27_10355Not AvailablePositive2175884 - 217693339119.0
Crossover junction endodeoxyribonuclease rusaEYY27_10360Not AvailablePositive2176946 - 217730213538.7
Late gene regulator qEYY27_10365Not AvailablePositive2177317 - 217813830552.8

Displaying genes 91 – 100 of 4956 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total