Escherichia coli strain Broiler parent89

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain Broiler parent89 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic and capable of mobility due to the presence of flagella. It typically resides in host-associated habitats and has an optimal growth temperature of 37°C, placing it within the mesophilic temperature range. The strain possesses a single replicon and features a double membrane structure, which is characteristic of Gram-negative bacteria. This strain is known to have a diverse range of hosts, including various species from the animal kingdom such as Homo sapiens, Gallus gallus, Bos taurus, and several others, extending to different taxa including mammals, birds, and even invertebrates like mollusks and insects. This broad host range highlights its ecological versatility and potential for interactions within various ecosystems. E. coli strain Broiler parent89 is associated with numerous health effects, particularly in humans, where it can lead to urinary tract infections (UTIs), gastrointestinal infections, and serious conditions such as septicemia and neonatal meningitis. The strain is also linked to foodborne illnesses, contributing to diarrheal diseases and conditions like hemolytic uremic syndrome (HUS). The pathogenicity of this strain primarily affects humans, indicating its role as a significant agent in clinical microbiology. Studying E. coli strain Broiler parent89 can provide insights into host-pathogen interactions, the epidemiology of infections, and the mechanisms of pathogenicity that can inform public health strategies. Understanding its diverse host associations further emphasizes the importance of monitoring this strain in both clinical and environmental contexts to mitigate its impact on health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain Broiler parent89

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain Broiler parent89
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain Broiler parent89

Gene Summary

Adenine Count

1269160 bp

Thymine Count

1265808 bp

Guanine Count

1287494 bp

Cytosine Count

1304868 bp

Genome Length

5127438 bp

Protein-coding Genes

4763 genes

Non-Coding Genes

190 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-aspartate oxidaseEYY09_05785Not AvailableNegative1129935 - 113155760195.7
rpoe leader peptide rsedEYY09_05790Not AvailablePositive1131813 - 11319686229.83
rna polymerase sigma factor rpoeEYY09_05795Not AvailablePositive1131965 - 113254021697.0
anti-sigma-e factor rseaEYY09_05800Not AvailablePositive1132573 - 113322324322.8
sigma-e factor regulatory protein rsebEYY09_05805Not AvailablePositive1133223 - 113417935777.9
soxr-reducing system protein rsecEYY09_05810Not AvailablePositive1134176 - 113465516641.3
elongation factor 4EYY09_05815Not AvailablePositive1134853 - 113665266530.1
signal peptidase iEYY09_05820Not AvailablePositive1136668 - 113764235948.3
ribonuclease iiiEYY09_05825Not AvailablePositive1137914 - 113859425551.6
gtpase eraEYY09_05830Not AvailablePositive1138591 - 113949633798.1

Displaying genes 1191 – 1200 of 4953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total