Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain Broiler parent88 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1299855 bp
Thymine Count
1303429 bp
Guanine Count
1344603 bp
Cytosine Count
1322967 bp
Genome Length
5271010 bp
Protein-coding Genes
4799 genes
Non-Coding Genes
456 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase formation protein hypd | EYY08_13900 | Not Available | Negative | 2730292 - 2731413 | 41396.7 |
| hydrogenase 3 maturation protein hypc | EYY08_13905 | Not Available | Negative | 2731413 - 2731685 | 9732.58 |
| hydrogenase nickel incorporation protein hypb | EYY08_13910 | Not Available | Negative | 2731676 - 2732548 | 31566.8 |
| hydrogenase maturation nickel metallochaperone hypa | EYY08_13915 | Not Available | Negative | 2732552 - 2732902 | 13168.9 |
| hypothetical protein | EYY08_13920 | Not Available | Positive | 2732808 - 2733026 | 8011.78 |
| formate hydrogenlyase regulatory protein hyca | EYY08_13925 | Not Available | Positive | 2733114 - 2733575 | 17627.9 |
| 4fe-4s dicluster domain-containing protein | EYY08_13930 | Not Available | Positive | 2733700 - 2734311 | 21874.4 |
| formate hydrogenlyase subunit 3 | EYY08_13935 | Not Available | Positive | 2734308 - 2736134 | 64113.2 |
| formate hydrogenlyase subunit hycd | EYY08_13940 | Not Available | Positive | 2736137 - 2737060 | 33059.4 |
| hydrogenase large subunit | EYY08_13945 | Not Available | Positive | 2737078 - 2738787 | 64984.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





