Escherichia coli strain Broiler parent88

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain Broiler parent88 is a Gram-negative, rod-shaped bacterium that exhibits mobility and possesses flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both oxygen-rich and oxygen-poor environments. E. coli Broiler parent88 is mesophilic, with an optimal growth temperature of 37°C, which aligns with the body temperature of many warm-blooded hosts. This strain is associated with a wide range of hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and various other mammals, birds, and even some plants. Its free-living biotic relationship suggests that it can survive independently of its hosts, although it often engages in pathogenic interactions, particularly in human health. E. coli strain Broiler parent88 is known to be associated with numerous health effects. It is implicated in urinary tract infections (UTIs), peritonitis, gastrointestinal infections, and a variety of severe conditions such as neonatal meningitis, septicemia, and hemolytic uremic syndrome (HUS). The strain can cause both mild and severe diarrhea, leading to complications such as renal failure and anemia. In livestock, it contributes to diseases like colibacillosis and post-weaning diarrhea. The ecological insight drawn from the wide range of hosts and serious health implications indicates that E. coli strain Broiler parent88 plays a significant role in the dynamics of microbial communities in various environments, particularly in relation to human and animal health. Its adaptability and pathogenic potential underscore the importance of monitoring and managing E. coli strains in agricultural and clinical settings to prevent outbreaks of foodborne and infectious diseases.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain Broiler parent88

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain Broiler parent88
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain Broiler parent88

Gene Summary

Adenine Count

1299855 bp

Thymine Count

1303429 bp

Guanine Count

1344603 bp

Cytosine Count

1322967 bp

Genome Length

5271010 bp

Protein-coding Genes

4799 genes

Non-Coding Genes

456 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Recombination-associated protein rdgcEYY08_11660Not AvailableNegative2263736 - 226464133626.4
Conserved protein of unknown function uhrEYY08_11665Not AvailableNegative2264634 - 226491810736.9
Alanine racemaseEYY08_11670Not AvailablePositive2265193 - 22653725949.94
Conserved protein of unknown function upfbEYY08_11675Not AvailablePositive2265381 - 226616927036.6
Outer membrane lytic proteinEYY08_11680Not AvailablePositive2266209 - 226663115763.9
Conserved protein of unknown function upfaEYY08_11685Not AvailablePositive2266809 - 226720114777.2
Replication protein repaEYY08_11690Not AvailablePositive2267536 - 226842033165.0
Hypothetical proteinEYY08_11695Not AvailablePositive2268713 - 226952230636.6
Partition protein paraEYY08_11700Not AvailablePositive2269691 - 227088744224.0
Partition protein parbEYY08_11705Not AvailablePositive2270904 - 227190537442.8

Displaying genes 121 – 130 of 5255 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total