Escherichia coli strain Broiler parent62

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain Broiler parent62 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments. As a facultative anaerobe, it can adapt to both aerobic and anaerobic conditions, with an optimal growth temperature of 37°C, placing it within a mesophilic temperature range. This strain exhibits mobility, possessing flagella, and typically arranges itself in pairs or as single cells. E. coli strain Broiler parent62 has a diverse range of hosts, including Homo sapiens, various livestock such as Gallus gallus (chickens) and Bos taurus (cattle), as well as other mammals, birds, and even plant species like Solanum lycopersicum (tomatoes). This extensive host range indicates its versatile ecological niche, allowing it to thrive in various biological environments. Health effects associated with this strain are significant, as it has been implicated in a variety of serious conditions in humans, such as urinary tract infections (UTIs), gastrointestinal infections, and neonatal meningitis. Other health issues linked to this strain include peritonitis, food poisoning, and severe complications like hemolytic uremic syndrome (HUS), which can lead to acute renal failure. The strain's pathogenicity highlights its potential impact on human health, particularly in immunocompromised individuals or those with weakened defenses. The ecological insight from the data suggests that E. coli strain Broiler parent62 plays a complex role in both the microbiome of its hosts and the environment. Its ability to cause disease while also existing freely indicates its dual nature as both a commensal and a pathogen, which is a hallmark of many E. coli strains. This adaptability may contribute to its persistence in various ecosystems, influencing both animal health and food safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain Broiler parent62

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain Broiler parent62
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain Broiler parent62

Gene Summary

Adenine Count

1243835 bp

Thymine Count

1246024 bp

Guanine Count

1275553 bp

Cytosine Count

1274694 bp

Genome Length

5040213 bp

Protein-coding Genes

4549 genes

Non-Coding Genes

347 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Putative antirepressor protein antEYX84_10005Not AvailableNegative1997963 - 199828012112.6
Gp53EYX84_10010Not AvailableNegative1998392 - 199991857388.9
hypothetical proteinEYX84_10015Not AvailableNegative1999976 - 20000834283.49
Putative quaternary ammonium compound-resistance protein qaceEYX84_10020Not AvailableNegative2000175 - 200050711945.1
Ren proteinEYX84_10025Not AvailableNegative2000575 - 200087711131.6
Dna replication protein pEYX84_10030Not AvailableNegative2000874 - 200157526560.0
Replication protein oEYX84_10035Not AvailableNegative2001572 - 200250134536.2
Cii proteinEYX84_10040Not AvailableNegative2002588 - 200312720107.2
Helix-turn-helix domain-containing proteinEYX84_10045Not AvailableNegative2003197 - 20034278150.94
Repressor proteinEYX84_10050Not AvailablePositive2003532 - 200422125493.6

Displaying genes 131 – 140 of 4896 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total