Escherichia coli strain Broiler parent54

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain Broiler parent54 is a Gram-negative, rod-shaped bacterium characterized by its presence in pairs or singles and its facultative anaerobic metabolism. This strain is motile, possessing flagella, and thrives optimally at a temperature of 37°C within a mesophilic temperature range. It is classified as free-living and has a single replicon and a double membrane structure. The ecological niche of E. coli strain Broiler parent54 includes a wide array of hosts, such as Homo sapiens, Gallus gallus (chickens), and various other mammals, birds, and even plants like Solanum lycopersicum (tomato) and Brassica oleracea var. italica (broccoli). This versatility in host association underscores its significant role in diverse biological interactions. Clinically, E. coli strain Broiler parent54 has been implicated in several health issues, notably urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). The strain's pathogenicity in humans is significant, as it can lead to a range of diseases from mild diarrhea to severe systemic infections, underscoring its importance in public health. The broad host range and pathogenic potential of E. coli strain Broiler parent54 illustrate its ecological adaptability and the complexities of host-microbe interactions. Understanding these dynamics is crucial for managing infections and mitigating the health impacts associated with this strain.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain Broiler parent54

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain Broiler parent54
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain Broiler parent54

Gene Summary

Adenine Count

1299956 bp

Thymine Count

1302070 bp

Guanine Count

1313883 bp

Cytosine Count

1346883 bp

Genome Length

5262811 bp

Protein-coding Genes

4820 genes

Non-Coding Genes

322 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitrite transporter nircEYX77_25880Not AvailablePositive5084756 - 508556228565.2
uroporphyrinogen-iii c-methyltransferaseEYX77_25885Not AvailablePositive5085581 - 508695450010.5
duf4223 domain-containing proteinEYX77_25890Not AvailablePositive5087206 - 50873735819.16
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeEYX77_25895Not AvailableNegative5087481 - 508856638646.9
hypothetical proteinEYX77_25900Not AvailableNegative5088578 - 508988246446.2
duf2620 domain-containing proteinEYX77_25905Not AvailableNegative5089894 - 509024712479.5
phosphotriesterase-related proteinEYX77_25910Not AvailableNegative5090258 - 509113632871.4
phosphopentomutaseEYX77_25915Not AvailableNegative5091133 - 509235944593.2
yhfx family plp-dependent enzymeEYX77_25920Not AvailableNegative5092360 - 509352342530.8
prd domain-containing proteinEYX77_25925Not AvailableNegative5093607 - 509396913515.4

Displaying genes 4981 – 4990 of 5142 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total