Escherichia coli strain KCJK8354

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8354 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism. This strain is characterized by its ability to be motile, possessing flagella, and typically exists in pairs or as singles. It is mesophilic, with an optimal growth temperature of 37°C. E. coli KCJK8354 is primarily host-associated, demonstrating a broad range of potential hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), various mammals, and even some plants like Solanum lycopersicum (tomato). This diverse host range indicates the strain's ecological versatility and adaptability in different biological contexts. Clinically, E. coli strain KCJK8354 is associated with numerous health effects, including urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and various forms of sepsis. It can cause severe conditions such as hemorrhagic colitis and hemolytic uremic syndrome (HUS), which underscores its pathogenic potential in humans and other animals. The strain is also implicated in foodborne infections and has been linked to complications such as renal failure and colon carcinogenesis. The presence of E. coli KCJK8354 in both human and animal hosts highlights its role in the epidemiology of infectious diseases, particularly those related to the gastrointestinal and urinary tracts. Its ability to thrive in diverse environments and its pathogenicity suggest it plays a significant role in health and disease dynamics within ecosystems involving both flora and fauna.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8354

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8354
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8354

Gene Summary

Adenine Count

1143280 bp

Thymine Count

1149365 bp

Guanine Count

1192598 bp

Cytosine Count

1180671 bp

Genome Length

4665914 bp

Protein-coding Genes

4265 genes

Non-Coding Genes

209 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
efflux mfs transporter ydeeE5P21_18565Not AvailablePositive3809328 - 381051542585.4
protein mgtsE5P21_18570Not AvailablePositive3810642 - 38107373509.36
diguanylate cyclase dgczE5P21_18575Not AvailableNegative3810956 - 381184633895.5
ydei family stress tolerance ob fold proteinE5P21_18580Not AvailableNegative3812101 - 381249314134.9
2-oxo-tetronate isomeraseE5P21_18585Not AvailablePositive3812769 - 381328718211.7
peptidyl-dipeptidase dcpE5P21_18590Not AvailableNegative3813332 - 381537777476.8
bifunctional nadp-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase ydfgE5P21_18595Not AvailablePositive3815514 - 381626027250.5
gntr family transcriptional regulatorE5P21_18600Not AvailablePositive3816349 - 381703526566.7
putative selenium delivery protein ydfzE5P21_18605Not AvailablePositive3817213 - 38174167276.83
mannitol dehydrogenase family proteinE5P21_18610Not AvailableNegative3817452 - 381891253578.2

Displaying genes 3691 – 3700 of 4474 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total