Escherichia coli strain KCJK8392

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8392 is a Gram-negative, rod-shaped bacterium that exhibits a facultative anaerobic metabolism. This strain is capable of thriving in pairs or singles and possesses flagella, allowing for mobility. Its optimal growth temperature is 37°C, and it falls within the mesophilic temperature range. Notably, it comprises a single replicon and is characterized by having two membranes. KCJK8392 is associated with various hosts, including Homo sapiens, Gallus gallus (chickens), Bos taurus (cattle), and a wide array of other vertebrates and invertebrates such as Canis lupus familiaris (dogs), Felis catus (cats), and Solanum lycopersicum (tomatoes). This diverse host range indicates its adaptability and potential for interaction with multiple species in different ecological niches. Clinically, E. coli strain KCJK8392 is known for its pathogenicity in humans, being linked to numerous health effects such as urinary tract infections (UTIs), gastrointestinal infections, neonatal meningitis, and septicemia. The strain can cause severe conditions, including hemolytic uremic syndrome (HUS), which is associated with renal failure and gastrointestinal distress. The ability of KCJK8392 to inhabit a wide range of hosts and its significant pathogenic potential underscore its ecological role as both a free-living organism and a pathogen in various environments. This duality reflects the complex interactions E. coli can have in both health and disease contexts, highlighting its importance in microbiological research and public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8392

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8392
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8392

Gene Summary

Adenine Count

1219523 bp

Thymine Count

1212492 bp

Guanine Count

1251439 bp

Cytosine Count

1243238 bp

Genome Length

4926717 bp

Protein-coding Genes

4589 genes

Non-Coding Genes

272 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Is3 transposase aE5P18_07765Not AvailableNegative1602781 - 160340422180.5
Putative small terminase subunitE5P18_07770Not AvailablePositive1603489 - 16036535967.95
Putative large terminase subunitE5P18_07775Not AvailablePositive1603662 - 160576179169.2
Hypothetical proteinE5P18_07780Not AvailablePositive1605758 - 16059708271.93
Portal proteinE5P18_07785Not AvailablePositive1605970 - 160747856600.0
Head maturation proteaseE5P18_07790Not AvailablePositive1607423 - 160945073459.3
Hypothetical proteinE5P18_07795Not AvailablePositive1609537 - 160986011085.3
Hypothetical proteinE5P18_07800Not AvailablePositive1609853 - 161012810131.2
Putative tail componentE5P18_07805Not AvailablePositive1610140 - 161071821606.8
Putative tail componentE5P18_07810Not AvailablePositive1610715 - 161111615045.8

Displaying genes 1 – 10 of 4861 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total