Escherichia coli strain KCJK8065

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8065 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, primarily affecting a wide range of hosts, including Homo sapiens, various livestock (such as Bos taurus and Gallus gallus), and numerous other mammals, birds, and even some plants. KCJK8065 is mesophilic, with an optimal growth temperature of 37°C, which corresponds to the body temperature of humans and many warm-blooded animals. The strain possesses a single replicon and is characterized by having two membranes, a trait common to Gram-negative bacteria. This strain is notably pathogenic to humans, associated with a variety of health effects, including urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as hemolytic uremic syndrome (HUS) and septicemia. The diverse list of health effects indicates that KCJK8065 can cause significant morbidity, affecting not only the urinary tract but also leading to complications such as neonatal meningitis and colibacillosis. Ecologically, the ability of KCJK8065 to inhabit multiple hosts highlights its versatility and adaptability. Its pathogenic nature, combined with its presence in both human and animal hosts, underscores the importance of monitoring and understanding such strains in the context of public health, particularly regarding zoonotic transmission and foodborne infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8065

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8065
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8065

Gene Summary

Adenine Count

1174924 bp

Thymine Count

1174449 bp

Guanine Count

1207575 bp

Cytosine Count

1219275 bp

Genome Length

4776223 bp

Protein-coding Genes

4297 genes

Non-Coding Genes

357 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
flagellar basal body p-ring protein flgiE5O92_04940Not AvailableNegative1004403 - 100550038171.9
flagellar basal body l-ring protein flghE5O92_04945Not AvailableNegative1005512 - 100621024616.9
flagellar basal body rod protein flggE5O92_04950Not AvailableNegative1006263 - 100704527745.6
flagellar basal body rod protein flgfE5O92_04955Not AvailableNegative1007183 - 100793825915.7
flagellar hook protein flgeE5O92_04960Not AvailableNegative1007958 - 100916342001.5
flagellar hook assembly protein flgdE5O92_04965Not AvailableNegative1009188 - 100988323576.4
flagellar basal body rod protein flgcE5O92_04970Not AvailableNegative1009895 - 101029913968.8
flagellar basal body rod protein flgbE5O92_04975Not AvailableNegative1010303 - 101071915241.1
flagellar basal body p-ring formation protein flgaE5O92_04980Not AvailablePositive1010874 - 101153323536.5
anti-sigma-28 factor flgmE5O92_04985Not AvailablePositive1011609 - 101190210341.2

Displaying genes 1141 – 1150 of 4654 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total