Escherichia coli strain KCJK8056

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain KCJK8056 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic, allowing it to thrive in both aerobic and anaerobic environments. It typically exists in pairs or singles and possesses flagella, which confer mobility. The optimal temperature for growth is 37°C, placing this strain within the mesophilic range. KCJK8056 is associated with various hosts, including Homo sapiens (humans), Gallus gallus (chickens), Bos taurus (cattle), and several other vertebrates and invertebrates. This strain has a free-living biotic relationship, which indicates its ability to survive independently in various environments. It has a single replicon and is characterized by a double membrane structure. Clinically, E. coli strain KCJK8056 is implicated in numerous health issues, particularly in humans, where it can cause urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). The extensive list of health effects associated with this strain highlights its pathogenic potential and the significant public health implications of infections it can cause, including peritonitis, sepsis, and diarrhea. Given its diverse host range and pathogenic capabilities, the ecological insight is that E. coli strain KCJK8056 plays a notable role in both environmental and clinical microbiology. Its presence in various hosts underscores the importance of monitoring this strain in agricultural and healthcare settings to prevent outbreaks of associated diseases.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain KCJK8056

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain KCJK8056
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain KCJK8056

Gene Summary

Adenine Count

1098927 bp

Thymine Count

1092481 bp

Guanine Count

1130964 bp

Cytosine Count

1145514 bp

Genome Length

4467906 bp

Protein-coding Genes

4166 genes

Non-Coding Genes

108 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate aminotransferase family proteinE5O88_00110Not AvailableNegative18355 - 1957543769.5
aminodeoxychorismate synthase component 2E5O88_00115Not AvailableNegative19661 - 2022420773.1
putative adenosine monophosphate-protein transferase ficE5O88_00120Not AvailableNegative20256 - 2085822942.3
duf2559 family proteinE5O88_00125Not AvailableNegative20848 - 210156668.12
peptidylprolyl isomerase aE5O88_00130Not AvailableNegative21120 - 2169220433.4
mfs transporter tsgaE5O88_00135Not AvailablePositive21963 - 2314443213.0
nitrite reductase large subunitE5O88_00140Not AvailablePositive23406 - 2594993112.6
5s ribosomal rnaNot AvailableNot AvailablePositive25358 - 25473Not Available
nitrite reductase small subunit nirdE5O88_00145Not AvailablePositive25946 - 2627212284.7
nitrite transporter nircE5O88_00150Not AvailablePositive26394 - 2720028564.1

Displaying genes 41 – 50 of 4274 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total