Petrotoga sibirica strain DSM 13575

anaerobic

Kingdom

Thermotogati

Phylum

Thermotogota

Class

Thermotogae

Order

Petrotogales

Family

Petrotogaceae

Genus

Petrotoga

Description

Petrotoga sibirica strain DSM 13575 is an anaerobic bacterium, indicating that it thrives in environments devoid of oxygen. This trait is crucial for its ecological niche, as it likely resides in deep-sea sediments or other anoxic environments where metabolic processes occur without oxygen. The strain possesses true flagella, which are structures that enable motility. This feature suggests that P. sibirica can navigate its habitat effectively, potentially aiding in nutrient acquisition or colonization of specific microhabitats within its environment. Genetically, P. sibirica DSM 13575 has one replicon, which is indicative of a streamlined genomic architecture that may facilitate efficient replication and adaptation to its anaerobic lifestyle. Its genetic information is cataloged under the accession number SODZ00000000.1, contributing to the growing body of knowledge about anaerobic microorganisms. In summary, the traits of Petrotoga sibirica strain DSM 13575—anaerobic metabolism, motility through flagella, and a single replicon—illustrate its specialization for life in oxygen-deprived environments. Understanding such organisms can provide insights into biogeochemical cycles and the ecological roles of microbes in extreme conditions.

Taxonomy

KingdomThermotogati
PhylumThermotogota
ClassThermotogae
OrderPetrotogales
FamilyPetrotogaceae
GenusPetrotoga
SpeciesPetrotoga sibirica
Strainstrain DSM 13575

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Petrotoga sibirica strain DSM 13575 Ga0215640_136, whole genome

Gene Summary

Adenine Count

691982 bp

Thymine Count

675765 bp

Guanine Count

361969 bp

Cytosine Count

335323 bp

Genome Length

2065517 bp

Protein-coding Genes

1928 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinC8D74_10867Not AvailableNegative1127332 - 112780818097.7
thiamine diphosphokinaseC8D74_10868Not AvailableNegative1127824 - 112848024622.8
nad(p)h-hydrate epimeraseC8D74_10869Not AvailableNegative1128494 - 112996653180.9
adenylosuccinate synthetaseC8D74_10870Not AvailableNegative1129987 - 113139053042.8
23s rrna (pseudouridine1915-n3)-methyltransferaseC8D74_10871Not AvailableNegative1131509 - 113197618088.0
glutamate formiminotransferaseC8D74_10872Not AvailableNegative1131973 - 113289335151.4
rod shape determining protein rodaC8D74_10873Not AvailableNegative1132897 - 113400341822.9
bira family biotin operon repressor/biotin-[acetyl-coa-carboxylase] ligaseC8D74_10874Not AvailablePositive1134178 - 113491227821.8
hypoxanthine phosphoribosyltransferaseC8D74_10875Not AvailablePositive1135085 - 113559719457.4
purine-nucleoside phosphorylaseC8D74_10876Not AvailablePositive1135613 - 113644030232.7

Displaying genes 1071 – 1080 of 1982 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.