Dinghuibacter silviterrae strain DSM 100059

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Dinghuibacter

Description

Dinghuibacter silviterrae strain DSM 100059 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain thrives optimally at a temperature of 29°C, situating it within the mesophilic temperature range. Its genomic structure is marked by a single replicon, and it is cataloged under the accession number SODV00000000.1. As a member of the microbial community, Dinghuibacter silviterrae may play a role in various ecological processes, potentially contributing to nutrient cycling in its habitat. The aerobic nature of this bacterium suggests it requires oxygen for growth, which may influence its distribution in environments where oxygen levels are variable. The optimal growth temperature of 29°C indicates that it may be well adapted to moderate thermal conditions, promoting its survival and activity in temperate ecosystems. The non-motility of Dinghuibacter silviterrae could limit its ability to actively seek out resources or escape unfavorable conditions; however, it may rely on passive dispersal mechanisms. Understanding the ecological roles and interactions of such microbes can provide insights into the dynamics of microbial communities and their influence on ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusDinghuibacter
SpeciesDinghuibacter silviterrae
Strainstrain DSM 100059

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dinghuibacter silviterrae strain DSM 100059 Ga0244717_14, whole

Gene Summary

Adenine Count

1446260 bp

Thymine Count

1427555 bp

Guanine Count

1808983 bp

Cytosine Count

1814377 bp

Genome Length

6497175 bp

Protein-coding Genes

5399 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c oxidase cbb3-type subunit 1EDB95_0030Not AvailableNegative24239 - 2639881239.5
badm/rrf2 family transcriptional regulatorEDB95_0031Not AvailableNegative26493 - 2692716137.7
ketosteroid isomerase-like proteinEDB95_0032Not AvailableNegative27247 - 2802029417.9
transcriptional regulator with gaf, atpase, and fis domainEDB95_0033Not AvailablePositive28152 - 2971759329.8
hypothetical proteinEDB95_0034Not AvailablePositive29726 - 299177095.56
parallel beta helix pectate lyase-like proteinEDB95_0035Not AvailablePositive30000 - 3119343205.2
putative outer membrane starch-binding proteinEDB95_0036Not AvailableNegative31255 - 3300664894.0
iron complex outermembrane receptor proteinEDB95_0037Not AvailableNegative33018 - 35918105023.0
putative outer membrane starch-binding proteinEDB95_0038Not AvailableNegative36066 - 3763158354.9
iron complex outermembrane receptor proteinEDB95_0039Not AvailableNegative37628 - 40855118112.0

Displaying genes 31 – 40 of 2402 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.