Dinghuibacter silviterrae strain DSM 100059

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Dinghuibacter

Description

Dinghuibacter silviterrae strain DSM 100059 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain thrives optimally at a temperature of 29°C, situating it within the mesophilic temperature range. Its genomic structure is marked by a single replicon, and it is cataloged under the accession number SODV00000000.1. As a member of the microbial community, Dinghuibacter silviterrae may play a role in various ecological processes, potentially contributing to nutrient cycling in its habitat. The aerobic nature of this bacterium suggests it requires oxygen for growth, which may influence its distribution in environments where oxygen levels are variable. The optimal growth temperature of 29°C indicates that it may be well adapted to moderate thermal conditions, promoting its survival and activity in temperate ecosystems. The non-motility of Dinghuibacter silviterrae could limit its ability to actively seek out resources or escape unfavorable conditions; however, it may rely on passive dispersal mechanisms. Understanding the ecological roles and interactions of such microbes can provide insights into the dynamics of microbial communities and their influence on ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusDinghuibacter
SpeciesDinghuibacter silviterrae
Strainstrain DSM 100059

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dinghuibacter silviterrae strain DSM 100059 Ga0244717_14, whole

Gene Summary

Adenine Count

1446260 bp

Thymine Count

1427555 bp

Guanine Count

1808983 bp

Cytosine Count

1814377 bp

Genome Length

6497175 bp

Protein-coding Genes

5399 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhamnogalacturonyl hydrolase yesrEDB95_2400Not AvailablePositive2703595 - 270468340809.3
acyl dehydrataseEDB95_2401Not AvailablePositive2704754 - 270520617168.6
multiple sugar transport system substrate-binding proteinEDB95_2402Not AvailablePositive2705222 - 270638243408.8
crotonobetainyl-coa:carnitine coa-transferase caib-like acyl-coa transferaseEDB95_2403Not AvailablePositive2706379 - 270766244978.2
crotonobetainyl-coa:carnitine coa-transferase caib-like acyl-coa transferaseEDB95_2404Not AvailablePositive2707659 - 270889144430.0
l-fuconolactonaseEDB95_2405Not AvailablePositive2708872 - 270973232103.5
putative dehydrogenaseEDB95_2406Not AvailablePositive2709746 - 271079538598.5
hypothetical proteinEDB95_2407Not AvailablePositive2710792 - 271345898101.5
polygalacturonaseEDB95_2408Not AvailablePositive2713461 - 271508057890.8
uncharacterized protein duf4982EDB95_2409Not AvailablePositive2715077 - 2720965216824.0

Displaying genes 2391 – 2400 of 2402 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.